PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA03g32220
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family C2H2
Protein Properties Length: 180aa    MW: 19782.4 Da    PI: 8.702
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA03g32220genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.30.000126789123
                EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                ++C++C + F ++  L  H++ H
  CA03g32220 67 FSCNYCQRKFYSSQALGGHQNAH 89
                89******************988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576679.86E-76494No hitNo description
PROSITE profilePS5015711.4276794IPR007087Zinc finger, C2H2
PROSITE patternPS0002806989IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 180 aa     Download sequence    Send to blast
MEVQASEQIS NNNQTTQDDQ ENDDLFLDLS LDHGPKSNII PTSSSDASRA ASNNNNNNNN  60
ESEPRIFSCN YCQRKFYSSQ ALGGHQNAHK RERTIAKRGQ KISSSAAFGY DKYSSMASLP  120
LHGSFNRSLG IQVHSMIHKP TISTTFGAPT LYGHPGWSIR RPIDQQXXXX XGQKATTAT*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016562909.11e-121PREDICTED: zinc finger protein 1
TrEMBLK4BLK96e-88K4BLK9_SOLLC; Uncharacterized protein
STRINGSolyc03g117070.1.12e-87(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA58272233
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10970.11e-36C2H2 family protein